MRIQC#
Author: Monika Doerig
Citation:
MRIQC:
Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661
The documentation of this project is found here.
Data from OpenNeuro: Flanker Dataset
Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null
Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.
Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434
Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046
Setup Neurodesk#
%%capture
import os
import sys
IN_COLAB = 'google.colab' in sys.modules
if IN_COLAB:
os.environ["LD_PRELOAD"] = "";
os.environ["APPTAINER_BINDPATH"] = "/content,/tmp,/cvmfs"
os.environ["MPLCONFIGDIR"] = "/content/matplotlib-mpldir"
os.environ["LMOD_CMD"] = "/usr/share/lmod/lmod/libexec/lmod"
!curl -J -O https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/googlecolab_setup.sh
!chmod +x googlecolab_setup.sh
!./googlecolab_setup.sh
os.environ["MODULEPATH"] = ':'.join(map(str, list(map(lambda x: os.path.join(os.path.abspath('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/'), x),os.listdir('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/')))))
# Output CPU information:
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : AuthenticAMD
model name : AMD EPYC-Rome Processor
Load MRIQC#
import lmod
await lmod.purge()
await lmod.load('mriqc/22.0.6')
await lmod.list()
Lmod Warning: The environment MODULEPATH has been changed in unexpected ways.
Lmod is unable to use given MODULEPATH. It is using:
"/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/functional_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/rodent_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_registration:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/structural_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_segmentation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quantitative_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/workflows:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/hippocampus:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_reconstruction:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/data_organisation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/electrophysiology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/phase_processing:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/programming:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/machine_learning:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/diffusion_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/body:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/visualization:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spectroscopy:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quality_control:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/statistics:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/shape_analysis:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spine:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/molecular_biology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/bids_apps:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/cryo_EM::".
Please use "module use ..." to change MODULEPATH instead.
['Lmod',
'Warning:',
'The',
'environment',
'MODULEPATH',
'has',
'been',
'changed',
'in',
'unexpected',
'ways.',
'Lmod',
'is',
'unable',
'to',
'use',
'given',
'MODULEPATH.',
'It',
'is',
'using:',
'"/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/functional_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/rodent_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_registration:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/structural_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_segmentation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quantitative_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/workflows:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/hippocampus:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_reconstruction:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/data_organisation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/electrophysiology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/phase_processing:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/programming:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/machine_learning:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/diffusion_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/body:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/visualization:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spectroscopy:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quality_control:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/statistics:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/shape_analysis:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spine:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/molecular_biology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/bids_apps:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/cryo_EM::".',
'Please',
'use',
'"module',
'use',
'to',
'change',
'MODULEPATH',
'instead.',
'mriqc/22.0.6']
!mriqc -help
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
[--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
[--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
[--bids-database-dir PATH] [--nprocs NPROCS]
[--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
[--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
[--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
[--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
[--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
[--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
[--fd_thres FD_THRES] [--deoblique] [--despike]
[--start-idx START_IDX] [--stop-idx STOP_IDX]
bids_dir output_dir {participant,group} [{participant,group} ...]
mriqc: error: argument -h/--help: ignored explicit argument 'elp'
Data preparation#
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03
Clone attempt: 0%| | 0.00/2.00 [00:00<?, ? Candidate locations/s]
Enumerating: 0.00 Objects [00:00, ? Objects/s]
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[INFO ] scanning for unlocked files (this may take some time)
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| datalad siblings -d "/storage/tmp/tmpkhwfx9hs/ds000102" enable -s s3-PRIVATE
install(ok): /storage/tmp/tmpkhwfx9hs/ds000102 (dataset)
Total: 0%| | 0.00/204M [00:00<?, ? Bytes/s]
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get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01 (directory)
get(ok): sub-03 (directory)
get(ok): sub-02 (directory)
action summary:
get (ok: 12)
Running MRIQC#
The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.
Positional Arguments#
bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.analysis_level: Possible choices: participant, group
Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.
-v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.
Options to handle performance#
--nprocs, --n_procs, --n_cpus, -n-cpusMaximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.--mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.
Instrumental options#
-w, --work-dir: Path where intermediate results should be stored.--verbose-reports: Generate verbose HTML reports with additional details--no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.
!
Warning:
--no-sub and --notrack may be necessary in environments with restricted internet access, where submission attempts may trigger runtime errors.
Participant-level Analysis#
%%bash
# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir
# Run MRIQC
mriqc ds000102 \
MRIQC \
participant \
--participant-label sub-01 sub-02 sub-03 \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10000 \
--verbose-reports \
-v
250507-00:48:37,509 cli IMPORTANT:
Running MRIQC version 22.0.6:
* BIDS dataset path: /storage/tmp/tmpkhwfx9hs/ds000102.
* Output folder: /storage/tmp/tmpkhwfx9hs/MRIQC.
* Analysis levels: ['participant'].
250507-00:48:41,554 nipype.workflow INFO:
Building functional MRIQC workflow for files: /storage/tmp/tmpkhwfx9hs/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /storage/tmp/tmpkhwfx9hs/ds000102/sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz, /storage/tmp/tmpkhwfx9hs/ds000102/sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz, /storage/tmp/tmpkhwfx9hs/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /storage/tmp/tmpkhwfx9hs/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /storage/tmp/tmpkhwfx9hs/ds000102/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
250507-00:48:47,313 nipype.workflow INFO:
Building anatomical MRIQC workflow for 3 NIfTI files..
250507-00:49:15,548 nipype.workflow INFO:
Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
250507-00:49:16,197 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datalad_get".
250507-00:49:16,203 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:49:16,209 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:49:16,215 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
250507-00:49:16,216 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datalad_get".
250507-00:49:16,218 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:49:16,220 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:16,222 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:49:16,223 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250507-00:49:16,224 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:16,727 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.455272s.
250507-00:49:18,81 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.817965s.
250507-00:49:18,373 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:49:18,377 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:18,477 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.097665s.
250507-00:49:18,703 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:49:18,706 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:49:18,707 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:18,710 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:19,164 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.450784s.
250507-00:49:19,721 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.013381s.
250507-00:49:19,906 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:49:19,908 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:19,964 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.054809s.
250507-00:49:20,561 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:49:20,562 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:49:20,564 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:20,565 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:21,25 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.458482s.
250507-00:49:21,859 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 5.584109s.
250507-00:49:21,859 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 5.587651s.
250507-00:49:21,859 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 5.610974s.
250507-00:49:22,76 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.509734s.
250507-00:49:22,336 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:49:22,339 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:22,434 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.093753s.
250507-00:49:22,720 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:49:22,724 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:49:22,724 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:22,727 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:23,180 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.451992s.
250507-00:49:24,156 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.43056s.
250507-00:49:24,409 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:49:24,412 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:24,508 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.094193s.
250507-00:49:25,155 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
250507-00:49:25,157 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250507-00:49:25,158 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:25,160 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:25,641 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.479155s.
250507-00:49:26,573 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.413082s.
250507-00:49:26,848 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
250507-00:49:26,851 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:26,914 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.062744s.
250507-00:49:27,241 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
250507-00:49:27,246 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250507-00:49:27,248 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:27,250 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
250507-00:49:27,731 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed time 0.478496s.
250507-00:49:28,779 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.528891s.
250507-00:49:29,90 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
250507-00:49:29,94 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-00:49:29,196 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.09955s.
250507-00:49:29,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/conform".
250507-00:49:29,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/conform".
250507-00:49:29,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
250507-00:49:29,789 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
250507-00:49:29,793 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:49:29,795 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:49:29,796 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:29,796 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:29,817 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
250507-00:49:29,826 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
250507-00:49:29,833 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
250507-00:49:29,843 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250507-00:49:31,427 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.629391s.
250507-00:49:31,429 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.631337s.
250507-00:49:31,454 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.623968s.
250507-00:49:31,464 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.668437s.
250507-00:49:31,478 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.680244s.
250507-00:49:31,506 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.659725s.
250507-00:49:31,958 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:49:31,959 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:49:31,961 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:49:31,961 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:49:31,963 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:31,963 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:31,965 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:31,966 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:32,62 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.096995s.
250507-00:49:32,65 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.098363s.
250507-00:49:33,753 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/sanitize".
250507-00:49:33,753 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
250507-00:49:33,755 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
250507-00:49:33,756 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
250507-00:49:33,758 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:33,759 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250507-00:49:33,761 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:49:33,765 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:49:34,325 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.357887s.
250507-00:49:35,301 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 3.33631s.
250507-00:49:35,670 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_clip".
250507-00:49:35,670 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
250507-00:49:35,675 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:49:35,676 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:49:35,940 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.172696s.
250507-00:49:36,382 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 2.622376s.
250507-00:49:37,15 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 3.254385s.
250507-00:49:37,746 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMask".
250507-00:49:37,747 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNoise".
250507-00:49:37,748 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
250507-00:49:37,752 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:49:37,752 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:49:37,753 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250507-00:49:39,940 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.185882s.
250507-00:49:41,715 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
250507-00:49:41,719 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250507-00:49:43,831 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.109932s.
250507-00:49:45,740 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
250507-00:49:45,745 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:49:58,701 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 20.947055s.
250507-00:49:59,757 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:49:59,763 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:49:59,910 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 24.232644s.
250507-00:50:01,758 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:50:01,764 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:50:03,131 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 29.367738s.
250507-00:50:03,742 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:50:03,748 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:50:09,177 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 33.49868s.
250507-00:50:09,485 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 23.737911s.
250507-00:50:09,777 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:50:09,778 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:50:09,783 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:50:09,783 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:50:09,877 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 32.122835s.
250507-00:50:11,816 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:50:11,823 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:50:13,768 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 3.983319s.
250507-00:50:15,285 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 13.518554s.
250507-00:50:15,793 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:50:15,793 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:50:15,797 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:50:15,799 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:50:16,250 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 4.424988s.
250507-00:50:17,787 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
250507-00:50:17,793 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:50:23,374 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 7.574861s.
250507-00:50:23,832 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
250507-00:50:23,837 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:50:32,559 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 8.719526s.
250507-00:50:33,823 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
250507-00:50:33,829 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
250507-00:52:50,753 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 154.951507s.
250507-00:52:52,58 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
250507-00:52:52,64 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
250507-00:52:54,442 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 170.691694s.
250507-00:52:55,937 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
250507-00:52:55,945 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:52:56,238 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 4.171649s.
250507-00:52:57,953 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
250507-00:52:57,959 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:52:59,12 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 169.226566s.
250507-00:52:59,94 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 179.328905s.
250507-00:52:59,970 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
250507-00:52:59,970 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:52:59,975 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:52:59,977 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:52:59,986 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.007774s.
250507-00:53:01,951 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/mean".
250507-00:53:01,957 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:04,109 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.150524s.
250507-00:53:06,6 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:53:06,10 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:06,878 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 169.083678s.
250507-00:53:07,215 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.200285s.
250507-00:53:07,986 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
250507-00:53:07,986 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:07,991 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:07,999 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:08,894 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.901189s.
250507-00:53:10,32 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:53:10,40 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:53:10,48 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.0063s.
250507-00:53:11,146 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.141774s.
250507-00:53:12,102 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/mean".
250507-00:53:12,103 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:53:12,108 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:12,109 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:13,261 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.150361s.
250507-00:53:13,984 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.873755s.
250507-00:53:14,9 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
250507-00:53:14,15 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:14,875 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 161.043505s.
250507-00:53:15,991 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:15,992 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:53:15,997 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:53:15,998 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:16,5 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.006139s.
250507-00:53:16,938 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.93819s.
250507-00:53:17,48 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.030461s.
250507-00:53:18,27 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/mean".
250507-00:53:18,32 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:18,41 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:53:18,41 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
250507-00:53:18,47 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:18,49 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:19,154 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.105599s.
250507-00:53:19,944 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.909883s.
250507-00:53:20,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:20,40 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:20,868 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.826384s.
250507-00:53:20,898 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 2.84662s.
250507-00:53:22,51 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:53:22,53 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/mean".
250507-00:53:22,53 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:53:22,57 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:53:22,59 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:22,61 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:22,65 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.006349s.
250507-00:53:23,175 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.110926s.
250507-00:53:23,904 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.842509s.
250507-00:53:23,950 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
250507-00:53:23,950 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:23,961 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:23,961 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:24,880 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.917187s.
250507-00:53:26,1 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
250507-00:53:26,1 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/mean".
250507-00:53:26,6 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:53:26,7 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:26,15 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.006981s.
250507-00:53:27,277 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.267455s.
250507-00:53:27,362 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.399082s.
250507-00:53:28,39 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250507-00:53:28,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
250507-00:53:28,42 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:28,45 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:28,47 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:28,49 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:28,969 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.918004s.
250507-00:53:29,99 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.052504s.
250507-00:53:30,69 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
250507-00:53:30,70 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/mean".
250507-00:53:30,77 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250507-00:53:30,77 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250507-00:53:30,86 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.007076s.
250507-00:53:31,56 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.006574s.
250507-00:53:31,963 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 1.884213s.
250507-00:53:31,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250507-00:53:31,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
250507-00:53:32,3 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250507-00:53:32,3 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
250507-00:53:33,95 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.090119s.
250507-00:53:34,10 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250507-00:53:34,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:53:34,17 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:53:34,20 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
250507-00:53:34,886 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 0.864435s.
250507-00:53:35,65 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 3.059026s.
250507-00:53:35,72 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.052931s.
250507-00:53:36,11 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:53:36,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:53:36,13 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:53:36,15 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:36,17 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:36,18 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:53:39,468 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.496414s.
250507-00:53:39,984 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:53:39,989 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:42,943 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.924281s.
250507-00:53:44,35 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:53:44,41 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:53:44,419 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 8.401643s.
250507-00:53:44,932 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.889388s.
250507-00:53:46,1 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:53:46,1 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:53:46,6 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:53:46,6 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:46,105 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 49.622222s.
250507-00:53:46,947 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 6.954236s.
250507-00:53:48,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:53:48,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
250507-00:53:48,38 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:48,38 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:53:48,634 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.138746s.
250507-00:53:49,189 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 50.776075s.
250507-00:53:50,25 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:53:50,25 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
250507-00:53:50,31 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:53:50,32 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:53:50,901 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 50.09523s.
250507-00:53:51,993 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
250507-00:53:51,998 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250507-00:53:52,169 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.161785s.
250507-00:53:53,985 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:53:53,989 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:53:55,22 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.031104s.
250507-00:53:56,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:53:56,38 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:53:57,776 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 9.736497s.
250507-00:53:58,23 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 7.988739s.
250507-00:53:59,807 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.79334s.
250507-00:54:00,66 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:54:00,67 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:54:00,72 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:00,73 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:01,993 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:54:01,998 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:08,609 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 8.534463s.
250507-00:54:08,970 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 8.895736s.
250507-00:54:09,51 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 7.051561s.
250507-00:54:10,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:54:10,35 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:54:10,35 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:54:10,38 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:10,39 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:54:10,41 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:54:11,460 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.418717s.
250507-00:54:11,987 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:54:11,996 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:12,159 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.116193s.
250507-00:54:14,17 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:54:14,22 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:19,447 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 9.407333s.
250507-00:54:20,15 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
250507-00:54:20,20 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:54:20,691 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 8.693037s.
250507-00:54:21,248 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.226053s.
250507-00:54:22,16 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250507-00:54:22,17 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250507-00:54:22,22 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:54:22,23 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:22,919 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 8.895868s.
250507-00:54:23,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250507-00:54:23,984 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:24,649 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.625475s.
250507-00:54:26,23 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250507-00:54:26,30 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:28,989 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.964743s.
250507-00:54:30,70 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
250507-00:54:30,75 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250507-00:54:31,211 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.134328s.
250507-00:54:32,27 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250507-00:54:32,33 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:54:32,163 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 8.177286s.
250507-00:54:33,329 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 7.296918s.
250507-00:54:34,13 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250507-00:54:34,14 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250507-00:54:34,18 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:34,19 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:34,907 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 2.872367s.
250507-00:54:36,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250507-00:54:36,42 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:40,823 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.802765s.
250507-00:54:40,891 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.870116s.
250507-00:54:42,55 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:54:42,56 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:54:42,62 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:54:42,62 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:54:43,812 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 7.766901s.
250507-00:54:44,23 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:54:44,29 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:54:46,108 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 4.043607s.
250507-00:54:47,134 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.103166s.
250507-00:54:48,14 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:54:48,14 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:54:48,19 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:54:48,23 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:54:48,166 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.144986s.
250507-00:54:50,81 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:54:50,88 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:54:53,491 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 5.465083s.
250507-00:54:54,144 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:54:54,151 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:54:54,606 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 12.542512s.
250507-00:54:56,86 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:54:56,95 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:54:59,412 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 9.321511s.
250507-00:55:00,49 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:55:00,59 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:55:00,630 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.4764s.
250507-00:55:02,93 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:55:02,99 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:55:03,993 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.892112s.
250507-00:55:06,74 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:55:06,81 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:55:09,163 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.079528s.
250507-00:55:09,465 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 9.4041s.
250507-00:55:10,74 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:55:10,74 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:55:10,79 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:55:10,84 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:55:10,173 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.092113s.
250507-00:55:12,56 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:55:12,62 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:55:13,911 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.82403s.
250507-00:55:16,78 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:55:16,90 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:55:20,826 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 8.76215s.
250507-00:55:22,72 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:55:22,79 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:55:22,547 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.4553519999999995s.
250507-00:55:24,79 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:55:24,86 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:55:30,655 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 102.614442s.
250507-00:55:32,94 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
250507-00:55:32,104 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:55:33,389 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 9.301936s.
250507-00:55:34,140 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
250507-00:55:34,146 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:55:36,516 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 104.51539s.
250507-00:55:38,186 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
250507-00:55:38,193 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:55:40,996 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 110.962767s.
250507-00:55:42,105 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
250507-00:55:42,111 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:55:43,534 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 9.38623s.
250507-00:55:44,102 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
250507-00:55:44,106 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:55:50,9 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 7.896723s.
250507-00:55:52,150 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
250507-00:55:52,159 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:55:52,775 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 20.667434s.
250507-00:55:54,164 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
250507-00:55:54,171 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:55:58,930 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 20.735697000000002s.
250507-00:56:00,167 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
250507-00:56:00,173 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:56:01,25 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 8.861504s.
250507-00:56:02,124 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
250507-00:56:02,131 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
250507-00:56:06,839 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 22.73132s.
250507-00:56:08,169 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
250507-00:56:08,186 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:56:12,901 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 12.726521s.
250507-00:56:14,255 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
250507-00:56:14,264 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:56:17,844 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 9.648934s.
250507-00:56:18,172 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
250507-00:56:18,182 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:56:18,754 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 24.581782s.
250507-00:56:20,157 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:56:20,167 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:56:21,824 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.6551040000000001s.
250507-00:56:22,135 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:56:22,142 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:56:24,226 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.082632s.
250507-00:56:25,550 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 23.416966s.
250507-00:56:26,138 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:56:26,139 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:56:26,144 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:56:26,146 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:56:26,187 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.041171s.
250507-00:56:28,127 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:56:28,133 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:56:29,244 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.095303s.
250507-00:56:30,144 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:56:30,152 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:56:31,486 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 3.350681s.
250507-00:56:31,820 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 13.633655s.
250507-00:56:32,173 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:56:32,174 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:56:32,181 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:56:32,181 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:56:34,534 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 20.268344s.
250507-00:56:36,204 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:56:36,207 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:56:37,503 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 7.349695s.
250507-00:56:38,136 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:56:38,142 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:56:38,453 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.244865s.
250507-00:56:40,207 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:56:40,215 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:56:40,403 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.25903s.
250507-00:56:42,169 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:56:42,175 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:56:42,221 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.043003s.
250507-00:56:42,497 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 106.399747s.
250507-00:56:43,417 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 11.234368s.
250507-00:56:44,140 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.923798s.
250507-00:56:44,216 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:56:44,216 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:56:44,217 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:56:44,223 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:56:44,225 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:56:44,226 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:56:46,178 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250507-00:56:46,185 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:56:49,768 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 5.543454s.
250507-00:56:50,188 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
250507-00:56:50,195 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:56:51,674 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 7.445916s.
250507-00:56:51,988 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 1.78881s.
250507-00:56:52,248 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
250507-00:56:52,255 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:56:54,165 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
250507-00:56:54,176 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:56:54,781 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.524546s.
250507-00:56:55,8 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 8.820555s.
250507-00:56:56,186 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
250507-00:56:56,188 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250507-00:56:56,191 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:56:56,198 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:56:56,232 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.038428s.
250507-00:56:57,277 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.098861s.
250507-00:56:58,174 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250507-00:56:58,175 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250507-00:56:58,183 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:56:58,185 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:57:04,245 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 6.060119s.
250507-00:57:04,557 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 8.357322s.
250507-00:57:06,242 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250507-00:57:06,242 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
250507-00:57:06,246 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
250507-00:57:06,249 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
250507-00:57:08,424 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.171112s.
250507-00:57:10,234 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/outliers".
250507-00:57:10,239 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
250507-00:57:11,694 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 109.611885s.
250507-00:57:12,215 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
250507-00:57:12,227 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
250507-00:57:13,69 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.8283709999999997s.
250507-00:57:14,144 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
250507-00:57:14,147 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
250507-00:57:14,328 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.175638s.
250507-00:57:14,660 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 8.412656s.
250507-00:57:16,90 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.858897s.
250507-00:57:16,259 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250507-00:57:16,260 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250507-00:57:16,265 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250507-00:57:16,266 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
250507-00:57:18,237 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250507-00:57:18,243 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:57:23,330 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 7.06363s.
250507-00:57:24,190 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
250507-00:57:24,200 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:57:25,783 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.57684s.
250507-00:57:26,8 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 9.740198s.
250507-00:57:26,225 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
250507-00:57:26,232 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:57:27,172 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.93757s.
250507-00:57:28,210 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
250507-00:57:28,211 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/fsl_bet".
250507-00:57:28,216 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:57:28,217 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:57:57,460 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 85.276531s.
250507-00:57:58,282 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
250507-00:57:58,288 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:57:59,857 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.565775s.
250507-00:58:00,233 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
250507-00:58:00,241 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:58:01,171 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.927916s.
250507-00:58:02,248 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
250507-00:58:02,257 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:58:33,710 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 95.522369s.
250507-00:58:34,260 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
250507-00:58:34,267 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:58:34,345 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 110.11647s.
250507-00:58:36,295 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
250507-00:58:36,301 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
250507-00:58:37,895 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.5910790000000001s.
250507-00:58:38,284 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
250507-00:58:38,291 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
250507-00:58:39,253 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 0.960012s.
250507-00:58:40,279 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
250507-00:58:40,288 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250507-00:59:02,643 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 104.397586s.
250507-00:59:04,311 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
250507-00:59:04,315 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250507-00:59:13,299 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 105.080742s.
250507-00:59:14,299 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
250507-00:59:14,314 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:15,160 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.844178s.
250507-00:59:16,310 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:59:16,317 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:16,343 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.02416s.
250507-00:59:18,177 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 109.958052s.
250507-00:59:18,344 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:59:18,355 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:20,316 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
250507-00:59:20,333 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:21,183 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.84527s.
250507-00:59:21,384 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 3.025121s.
250507-00:59:22,331 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:59:22,333 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:59:22,341 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:22,345 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:22,373 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.023457s.
250507-00:59:24,247 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 81.987196s.
250507-00:59:24,361 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
250507-00:59:24,374 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:24,754 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.409643s.
250507-00:59:25,231 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.855273s.
250507-00:59:26,357 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:59:26,361 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:59:26,361 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
250507-00:59:26,364 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:26,368 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:26,374 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:26,397 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.030866s.
250507-00:59:27,205 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.828756s.
250507-00:59:28,315 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:59:28,316 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:59:28,320 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:28,324 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:28,347 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.025109s.
250507-00:59:28,622 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.25217s.
250507-00:59:30,335 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
250507-00:59:30,335 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
250507-00:59:30,342 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:30,349 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:30,374 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.030374s.
250507-00:59:30,571 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.245413s.
250507-00:59:31,158 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.806715s.
250507-00:59:32,337 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
250507-00:59:32,337 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
250507-00:59:32,337 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
250507-00:59:32,343 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
250507-00:59:32,345 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:32,351 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
250507-00:59:32,368 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.023189s.
250507-00:59:33,193 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 0.840184s.
250507-00:59:34,364 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
250507-00:59:34,364 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/segmentation".
250507-00:59:34,372 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:34,373 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-00:59:34,804 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.457284s.
250507-00:59:35,761 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.387048s.
250507-00:59:36,388 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
250507-00:59:36,388 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
250507-00:59:36,395 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-00:59:36,395 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-00:59:43,580 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 7.183467s.
250507-00:59:44,336 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/segmentation".
250507-00:59:44,343 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-01:00:10,422 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 96.152869s.
250507-01:00:12,384 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
250507-01:00:12,392 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:00:14,51 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 37.65474s.
250507-01:00:14,385 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
250507-01:00:14,397 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-01:00:26,557 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 106.266646s.
250507-01:00:28,179 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 13.77955s.
250507-01:00:28,426 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/segmentation".
250507-01:00:28,427 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
250507-01:00:28,435 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:00:28,436 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250507-01:00:47,961 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 35.566401s.
250507-01:00:48,457 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
250507-01:00:48,488 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:48,491 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001318s.
250507-01:00:48,675 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
250507-01:00:48,684 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:48,745 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.059441s.
250507-01:00:50,436 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
250507-01:00:50,456 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:50,459 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001366s.
250507-01:00:50,715 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
250507-01:00:50,724 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:50,764 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.037416s.
250507-01:00:52,469 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
250507-01:00:52,488 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:52,491 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001564s.
250507-01:00:52,743 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
250507-01:00:52,749 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:52,788 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.037246s.
250507-01:00:54,429 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
250507-01:00:54,448 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:54,451 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001551s.
250507-01:00:54,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
250507-01:00:54,668 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:54,710 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.040417s.
250507-01:00:56,444 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
250507-01:00:56,465 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:56,468 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001785s.
250507-01:00:56,609 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 112.291661s.
250507-01:00:56,695 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
250507-01:00:56,701 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:56,745 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.041301s.
250507-01:00:58,486 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
250507-01:00:58,490 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
250507-01:00:58,498 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
250507-01:00:58,509 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:00:58,513 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001818s.
250507-01:00:58,769 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
250507-01:00:58,775 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
250507-01:00:58,817 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.040162s.
250507-01:01:00,514 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
250507-01:01:00,524 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-01:01:03,394 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 34.957031s.
250507-01:01:04,453 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
250507-01:01:04,462 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-01:01:07,620 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 7.094295s.
250507-01:01:08,450 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
250507-01:01:08,459 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
250507-01:01:10,560 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 6.096183s.
250507-01:01:10,782 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 12.281999s.
250507-01:01:12,478 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-01:01:12,480 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-01:01:12,493 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:12,498 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:15,352 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 6.8916509999999995s.
250507-01:01:16,528 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-01:01:16,543 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:17,948 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 5.452542s.
250507-01:01:18,451 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-01:01:18,472 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:18,564 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 6.064157s.
250507-01:01:20,497 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
250507-01:01:20,507 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:22,256 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 5.710941s.
250507-01:01:22,978 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 4.503817s.
250507-01:01:24,461 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
250507-01:01:24,465 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
250507-01:01:24,470 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-01:01:24,480 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
250507-01:01:24,686 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.214723s.
250507-01:01:24,926 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
250507-01:01:24,933 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-01:01:25,641 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 5.131483s.
250507-01:01:26,563 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
250507-01:01:26,571 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-01:01:28,971 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 4.489103s.
250507-01:01:30,553 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
250507-01:01:30,562 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-01:01:39,147 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 12.574812s.
250507-01:01:40,485 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
250507-01:01:40,492 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-01:01:40,656 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.162212s.
250507-01:01:40,911 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
250507-01:01:40,918 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-01:01:40,928 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 10.363835s.
250507-01:01:42,538 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
250507-01:01:42,546 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-01:01:44,20 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 19.086209s.
250507-01:01:44,513 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
250507-01:01:44,521 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-01:01:52,646 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 10.098092s.
250507-01:01:54,538 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
250507-01:01:54,549 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250507-01:01:54,777 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.226236s.
250507-01:01:54,991 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
250507-01:01:54,997 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
250507-01:01:55,836 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 11.314161s.
250507-01:01:56,517 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
250507-01:01:56,522 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
250507-01:02:00,541 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 19.621529s.
250507-01:02:02,513 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
250507-01:02:02,521 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
250507-01:02:08,88 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 11.565152s.
250507-01:02:08,529 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-01:02:08,542 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:08,544 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000476s.
250507-01:02:10,518 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-01:02:10,534 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:10,537 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000568s.
250507-01:02:12,187 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 9.664865s.
250507-01:02:12,360 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 17.361692s.
250507-01:02:12,497 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-01:02:12,498 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-01:02:12,504 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:12,506 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.00026s.
250507-01:02:12,511 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:12,513 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000414s.
250507-01:02:14,550 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
250507-01:02:14,550 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
250507-01:02:14,550 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-01:02:14,558 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:14,562 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:14,564 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000431s.
250507-01:02:14,564 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:02:14,566 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000452s.
250507-01:02:14,678 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:15,420 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
250507-01:02:15,422 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.862024s.
250507-01:02:16,602 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-01:02:16,601 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-01:02:16,602 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-01:02:16,610 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:16,610 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:16,612 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:16,613 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:16,619 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:16,620 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:16,674 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
250507-01:02:16,676 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.063467s.
250507-01:02:16,738 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
250507-01:02:16,739 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.12431s.
250507-01:02:16,742 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-2_bold.html
250507-01:02:16,743 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.130142s.
250507-01:02:18,562 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
250507-01:02:18,566 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
250507-01:02:18,566 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
250507-01:02:18,569 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:18,572 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000756s.
250507-01:02:18,573 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:18,574 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:02:18,576 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:18,576 cli WARNING:
Building bold report: no exclude index was found
250507-01:02:18,641 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
250507-01:02:18,643 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
250507-01:02:18,644 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.06754s.
250507-01:02:18,645 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.069012s.
250507-01:02:18,804 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
250507-01:02:18,811 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:18,814 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000673s.
250507-01:02:19,66 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
250507-01:02:19,72 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:19,74 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000623s.
250507-01:02:19,327 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
250507-01:02:19,335 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:19,338 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000805s.
250507-01:02:19,607 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:19,610 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:20,548 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
250507-01:02:20,554 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:20,556 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.00059s.
250507-01:02:20,866 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
250507-01:02:20,872 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:02:20,875 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000951s.
250507-01:02:21,123 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:21,125 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:21,128 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:21,128 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:22,278 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 2.665639s.
250507-01:02:22,563 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:22,568 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:24,213 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 3.083244s.
250507-01:02:24,365 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 3.235262s.
250507-01:02:24,510 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:24,514 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:24,942 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 2.371196s.
250507-01:02:26,522 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:26,527 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:26,531 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:26,534 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-01:02:26,534 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-01:02:26,537 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:26,539 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-01:02:26,539 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-01:02:26,541 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:26,543 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-01:02:26,543 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-01:02:27,363 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.84701s.
250507-01:02:28,513 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:28,514 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:28,531 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:28,532 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:28,968 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 2.439552s.
250507-01:02:30,557 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:30,560 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-01:02:30,561 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-01:02:30,563 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:30,565 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-01:02:30,565 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-01:02:30,567 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:30,569 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-01:02:30,569 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-01:02:31,459 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 2.925605s.
250507-01:02:31,583 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 3.049466s.
250507-01:02:32,543 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:32,548 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
250507-01:02:35,28 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 2.477953s.
250507-01:02:36,554 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250507-01:02:36,557 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed outputs
250507-01:02:36,558 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250507-01:02:36,560 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250507-01:02:36,562 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed outputs
250507-01:02:36,562 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250507-01:02:36,564 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250507-01:02:36,566 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed outputs
250507-01:02:36,566 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250507-01:04:36,95 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 301.719829s.
250507-01:04:36,677 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
250507-01:04:36,679 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
250507-01:04:36,689 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-01:04:36,690 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-01:04:39,762 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 3.070014s.
250507-01:04:40,683 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
250507-01:04:40,705 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-01:04:44,693 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 300.347932s.
250507-01:04:46,674 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
250507-01:04:46,675 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotSegmentation".
250507-01:04:46,683 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-01:04:46,683 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-01:04:47,265 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 10.573667s.
250507-01:04:48,685 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
250507-01:04:48,701 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:04:48,703 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000498s.
250507-01:04:49,532 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 2.847317s.
250507-01:04:50,702 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
250507-01:04:50,728 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-01:04:59,857 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 13.17198s.
250507-01:05:00,757 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
250507-01:05:00,772 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:05:00,775 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000454s.
250507-01:05:03,103 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 22.39537s.
250507-01:05:04,702 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
250507-01:05:04,721 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:05:04,725 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001857s.
250507-01:05:06,771 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
250507-01:05:06,782 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:05:07,125 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport/sub-01_T1w.html
250507-01:05:07,126 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.342032s.
250507-01:05:08,799 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
250507-01:05:08,808 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:05:08,810 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000645s.
250507-01:05:12,485 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 21.754786s.
250507-01:05:12,792 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
250507-01:05:12,809 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:05:12,812 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001437s.
250507-01:05:14,857 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
250507-01:05:14,866 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:05:15,175 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport/sub-02_T1w.html
250507-01:05:15,176 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.307672s.
250507-01:05:16,841 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
250507-01:05:16,848 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:05:16,850 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000665s.
250507-01:05:34,533 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 306.094828s.
250507-01:05:36,904 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
250507-01:05:36,904 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
250507-01:05:36,914 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
250507-01:05:36,914 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
250507-01:05:40,269 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 3.352089s.
250507-01:05:40,745 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
250507-01:05:40,766 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
250507-01:05:49,877 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 12.960533s.
250507-01:05:50,814 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
250507-01:05:50,829 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
250507-01:05:50,843 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.011648s.
250507-01:06:02,298 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 21.529723s.
250507-01:06:02,831 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
250507-01:06:02,849 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
250507-01:06:02,852 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.001694s.
250507-01:06:04,846 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
250507-01:06:04,855 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
250507-01:06:05,131 cli INFO:
Generated individual log: /storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport/sub-03_T1w.html
250507-01:06:05,145 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.287524s.
250507-01:06:06,854 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/storage/tmp/tmpkhwfx9hs/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..storage..tmp..tmpkhwfx9hs..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
250507-01:06:06,860 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250507-01:06:06,863 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000681s.
250507-01:06:08,715 cli IMPORTANT:
Participant level finished successfully.
250507-01:06:08,716 cli INFO:
Generating BIDS derivatives metadata.
250507-01:06:08,718 cli INFO:
MRIQC completed.
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
Group-level Analysis#
%%bash
mriqc ds000102 \
MRIQC \
group \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10000 \
--verbose-reports \
-v
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
MRIQC Visual Reports#
MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.
Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.
Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.
These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.
Anatomical Report#
%%capture
! pip install beautifulsoup4
from bs4 import BeautifulSoup
from IPython.display import HTML, display
with open('./MRIQC/sub-01_T1w.html') as f:
soup = BeautifulSoup(f, 'html.parser')
# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual T1w report
Summary
- BIDS filename: sub-01_T1w.
- Date and time: 2025-05-07, 01:05.
- MRIQC version: 22.0.6.
- Workflow details:
- Detected a zero-filled frame, has the original image been rotated?
Visual reports
Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
#
To restore the interactive view of the report within the notebook, this is another option to display it:
from IPython.display import IFrame
IFrame(src='./MRIQC/sub-01_T1w.html', width='100%', height='800px')
Functional Report#
with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
soup = BeautifulSoup(f, 'html.parser')
for tag in soup(['script', 'style', 'button', 'nav']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual bold report
Summary
- BIDS filename: sub-02_task-flanker_run-1_bold.
- Date and time: 2025-05-07, 01:02.
- MRIQC version: 22.0.6.
- Workflow details:
- Framewise Displacement was computed using
3dvolreg(AFNI) - Framewise Displacement threshold was defined at 0.200000 mm
- Framewise Displacement was computed using
Visual reports
BOLD average
Standard deviation map
FMRI summary plot
Zoomed-in BOLD average
Background noise
Calculated brain mask
Approximate spatial normalization
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Or:
IFrame(src='./MRIQC/sub-02_task-flanker_run-1_bold.html', width='100%', height='800px')
Group functional report#
with open('./MRIQC/group_bold.html', 'r') as f:
html = f.read()
display(HTML(html))
MRIQC: group bold report
Summary
- Date and time: 2025-05-07, 01:06.
- MRIQC version: 22.0.6.